YuLab-SMU/ggtree: :christmas_tree:Visualization and annotation of phylogenetic trees

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ggtree Recent Issues

Issue Title State Comments Created Date Updated Date Closed Date
Error when trying to scale and collaps multiple clades on tree open 0 2022-09-23 2022-09-21 -
groupOTU adds an extra group called 0 open 0 2022-09-23 2022-09-21 -
feature: ggrepel-style placement of inset annotations open 0 2022-09-20 2022-09-21 -
Heatmap with foldchange displayed closed 0 2022-09-20 2022-09-21 2022-09-20
Unable to choose "encircle" for unrooted tree open 1 2022-08-28 2022-09-21 -
Issue with angled unrooted tree label open 0 2022-08-22 2022-09-21 -
as_ylab in geom_tiplab suppresses custom tip labels closed 1 2022-08-09 2022-09-21 2022-08-12
Error in `vec_as_location()`: open 1 2022-08-06 2022-09-21 -
Error install ggtree R4.1.3 closed 2 2022-08-02 2022-09-21 2022-09-15
Error install ggtree R 4.2.1 closed 2 2022-07-29 2022-09-21 2022-09-15
Limit BEAST 95% HPD node date estimates for geom_range plotting of error closed 3 2022-07-11 2022-09-21 2022-07-12
angle not equal in equal-angle layout closed 1 2022-07-06 2022-09-21 2022-07-08
Installation fails on master with missing, undefined object closed 4 2022-07-04 2022-09-21 2022-07-08
how to use ggtree to draw fan-shaped tree with geological time scale open 3 2022-07-01 2022-09-21 -
gheatmap colnames in italics open 2 2022-06-28 2022-09-21 -
treedata book site is down open 0 2022-06-17 2022-09-21 -
gheatmap: colour columns individually from binary data open 0 2022-05-31 2022-09-21 -
ggtree collapse all but open 0 2022-05-30 2022-09-21 -
`future_lapply` leads to Error in UseMethod("MRCA") : no applicable method for 'MRCA' applied to an object of class "treedata" closed 1 2022-05-19 2022-09-21 2022-05-19
Label right tree in multiple cophylo/tanglegrams with ggtree closed 4 2022-05-18 2022-09-21 2022-06-01
安装ggtree咋还需要yulab.utils? closed 2 2022-05-16 2022-09-21 2022-05-16
rename tip label by a mapping table for multiphylo tree closed 1 2022-05-15 2022-09-21 2022-05-16
Angle of tip label wrong after using rotate with a fan tree open 0 2022-05-13 2022-09-21 -
Problems with ggtree and treeio closed 1 2022-04-26 2022-09-21 2022-04-27
How to automatically highlight different branch using different categories in tree? open 0 2022-04-22 2022-09-29 -
tibble format: branch.length & label open 0 2022-04-05 2022-09-21 -
geom_tiplab2 for rectangular trees closed 2 2022-03-02 2022-09-21 2022-03-03
Error: ! Can't subset `.data` outside of a data mask context. closed 2 2022-03-01 2022-09-21 2022-03-04
ggtree collapsed clade+images open 1 2022-02-26 2022-09-28 -
Problems with geom_tiplab() and parser when formatting labels contain numbers closed 2 2022-02-23 2022-09-21 2022-02-24
`phylopic_uid`: Error in download_url(path) : Failed to download closed 1 2022-02-18 2022-09-21 2022-02-24
`ggtree::read.tree` crashes RStudio open 7 2022-02-18 2022-09-21 -
how to keep branch length and resolved root, simultaneously? open 0 2022-02-11 2022-09-21 -
facet_widths() are not compatiable with plotly. Request to make annotated phylogenies interactive. open 0 2022-02-10 2022-09-29 -
geom_tiplab() tip labels disappearing closed 0 2022-02-10 2022-09-21 2022-02-11
geom_hilight with gradient does not show anything open 5 2022-02-02 2022-09-21 -
ggtree hangs indefinitely when using certain geoms closed 1 2022-02-01 2022-09-21 2022-02-16
Error in grid.Call.graphics(C_setviewport, vp, TRUE) : non-finite location and/or size for viewport open 1 2022-01-31 2022-09-21 -
tidy implementation of gheatmap? open 0 2022-01-30 2022-09-21 -
Warning message from `geom_cladelabel` open 0 2022-01-18 2022-09-29 -
How to retain the leading zeros “0” in the tip labels? closed 1 2022-01-17 2022-09-21 2022-05-26
how to solve x-axis line-end? open 5 2022-01-10 2022-09-21 -
image retrival from phylopic assumes image size open 2 2022-01-10 2022-09-28 -
how to add a gradient backgroud? closed 4 2022-01-10 2022-09-21 2022-01-11
Daylight layout error with labelling collapsed node closed 2 2022-01-07 2022-09-21 2022-01-24
Hi Prof. Yu, open 0 2022-01-06 2022-01-13 -
tutorial: Chapter10.3 open 2 2021-12-29 2022-09-21 -
Display Categorised Bootstrap Values. closed 1 2021-12-17 2022-09-21 2021-12-18
Two tree like pheatmap closed 2 2021-12-11 2022-09-21 2021-12-13
use graph layout to visualize tree open 3 2021-12-08 2022-09-21 -